publications

2025

1. Cell

   SPIDR enables multiplexed mapping of RNA-protein interactions and uncovers a mechanism for selective translational suppression upon cell stress

   Erica Wolin, Jimmy K Guo, Mario R Blanco, and 13 more authors

   Cell, 2025

   DOI Bib

   @article{wolin2025spidr,
     title = {SPIDR enables multiplexed mapping of RNA-protein interactions and uncovers a mechanism for selective translational suppression upon cell stress},
     author = {Wolin, Erica and Guo, Jimmy K and Blanco, Mario R and Goronzy, Isabel N and Gorhe, Darvesh and Dong, Wenzhao and Perez, Andrew A and Keskin, Abdurrahman and Valenzuela, Elizabeth and Abdou, Ahmed A and Urbinati, Carl R and Kaufhold, Ross and Rube, H Tomas and Brito Querido, Jailson and Guttman, Mitchell and Jovanovic, Marko},
     journal = {Cell},
     volume = {188},
     number = {19},
     pages = {5384--5402.e25},
     year = {2025},
     doi = {10.1016/j.cell.2025.06.042}
   }

2024

1. Mol Cell

   Large-scale map of RNA-binding protein interactomes across the mRNA life cycle

   Lena A Street, Katherine L Rothamel, Kristopher W Brannan, and 17 more authors

   Molecular Cell, 2024

   DOI Bib

   @article{street2024rbp,
     title = {Large-scale map of RNA-binding protein interactomes across the mRNA life cycle},
     author = {Street, Lena A and Rothamel, Katherine L and Brannan, Kristopher W and Jin, Wenhao and Bokor, Benjamin J and Dong, Kevin and Rhine, Kevin and Madrigal, Assael and Al-Azzam, Norah and Kim, Jenny Kim and Ma, Yanzhe and Gorhe, Darvesh and Abdou, Ahmed and Wolin, Erica and Mizrahi, Orel and Ahdout, Joshua and Mujumdar, Mayuresh and Doron-Mandel, Ella and Jovanovic, Marko and Yeo, Gene W},
     journal = {Molecular Cell},
     volume = {84},
     number = {19},
     pages = {3790--3809.e8},
     year = {2024},
     doi = {10.1016/j.molcel.2024.08.030}
   }

2. Cell Rep Methods

   Systematic analysis of proteome turnover in an organoid model of pancreatic cancer by dSILO

   Alison B Ross, Darvesh Gorhe, Jenny Kim Kim, and 6 more authors

   Cell Reports Methods, 2024

   DOI Bib

   @article{ross2024dsilo,
     title = {Systematic analysis of proteome turnover in an organoid model of pancreatic cancer by {dSILO}},
     author = {Ross, Alison B and Gorhe, Darvesh and Kim, Jenny Kim and Hodapp, Stefanie and DeVine, Lela and Chan, Karina M and Chio, Iok In Christine and Jovanovic, Marko and Ayres Pereira, Marina},
     journal = {Cell Reports Methods},
     volume = {4},
     number = {5},
     pages = {100760},
     year = {2024},
     doi = {10.1016/j.crmeth.2024.100760}
   }

2023

1. STAR Protoc

   Network-centric analysis of co-fractionated protein complex profiles using SECAT

   Benjamin J Bokor, Darvesh Gorhe, Marko Jovanovic, and 1 more author

   STAR Protocols, 2023

   DOI Bib

   @article{bokor2023secat,
     title = {Network-centric analysis of co-fractionated protein complex profiles using {SECAT}},
     author = {Bokor, Benjamin J and Gorhe, Darvesh and Jovanovic, Marko and Rosenberger, George},
     journal = {STAR Protocols},
     volume = {4},
     number = {2},
     pages = {102293},
     year = {2023},
     doi = {10.1016/j.xpro.2023.102293}
   }

2. bioRxiv

   SPIDR: a highly multiplexed method for mapping RNA-protein interactions uncovers a potential mechanism for selective translational suppression upon cellular stress

   Erica Wolin, Jimmy K Guo, Mario R Blanco, and 6 more authors

   bioRxiv, Jun 2023

   Preprint

   DOI Bib

   @article{wolin2023spidr,
     title = {{SPIDR}: a highly multiplexed method for mapping RNA-protein interactions uncovers a potential mechanism for selective translational suppression upon cellular stress},
     author = {Wolin, Erica and Guo, Jimmy K and Blanco, Mario R and Perez, Andrew A and Goronzy, Isabel N and Abdou, Ahmed A and Gorhe, Darvesh and Guttman, Mitchell and Jovanovic, Marko},
     journal = {bioRxiv},
     note = {Preprint},
     month = jun,
     year = {2023},
     doi = {10.1101/2023.06.05.543769}
   }